1:- module( bio_analytics, [
2 bio_analytics_version/2, % -Vers, -Date
3 bio_diffex/4, % +Exp, -DEs -NDEs, +Opts
4 bio_symbols/3, % +Vect, -Symbs, +Opts
5 bio_volcano_plot/2, % +Mtx, Opts
6 exp_gene_family_string_graph/4, % +Exp, +Fam, -Graph, +Opts
7 exp_go_over/3, % +Exp, NDEs, +Opts
8 exp_go_over_string_graphs/4, % +Exp, ?GoOver, ?Dir, +Opts
9 exp_go_over_string_graphs_multi/1,% +Opts
10 gene_family/3, % +Alias, +Org, +Symbols
11 go_org_symbol/3, % +Org, +GoT, -Symbol
12 go_org_symbols/3, % +Org, +GoT, -Symbols
13 go_string_graph/3, % +GoT, -Graph, +Opts
14 go_symbols_reach/3, % +GoT, -Symbs, +Opts
15 symbols_string_graph/3 % +Symbs, -Graph, +Opts
16 ] ).
?- bio_analytics_version(V,D). V = 0:6:0, D = date(2023,6,6).
*/
57bio_analytics_version( 0:6:0, date(2023,6,6) ). 58 59:- use_module(library(lists)). 60:- use_module(library(apply)). 61:- use_module(library(debug)). 62:- use_module(library(filesex)). 63:- use_module(library(lib)). 64 65:- lib(mtx). 66:- lib(real). 67:- lib(bio_db). 68:- lib(os_lib). 69:- lib(options). 70:- lib(debug_call). 71:- lib(promise(wgaph_plot/2,lib(wgraph))). 72 73:- debug_call:debug(ba(info)). 74 75:- lib(source(bio_analytics), homonyms(true)). 76 77:- lib(gene_family/3). 78:- lib(go_org_symbol/3). 79:- lib(go_org_symbols/3). 80:- lib(go_symbols_reach/3). 81:- lib(go_string_graph/3). 82:- lib(symbols_string_graph/3). 83:- lib(bio_diffex/4). 84:- lib(exp_gene_family_string_graph/4). 85:- lib(exp_go_over/3). 86:- lib(exp_go_over_string_graphs/4). 87:- lib(exp_go_over_string_graphs_multi/1). 88:- lib(bio_volcano_plot/2). 89:- lib(bio_symbols/3). 90:- lib(end(bio_analytics), homonyms(true)).
Computational biology data analytics.
Collects a number of biological data analytics tasks. This library provides tools for the bio_db served data, empowering downstream analyses of user's experimental data.
Installation and loading:
The library comes with one experimental dataset: data/silac/bt.csv which is used in the example files in directory examples/ .
*/